Research collaboration between China and Denmark for development of systemic approaches to agro-ecological pest management without pesticides with focus on vegetable, fruit and berry crops. Proceedings and recommendations from two network workshops

This report is the result of a network project which was established to discuss the potential for collaboration on development of systemic approaches to pest management without pesticides between Chinese and Danish researchers. The focus is on systemic approaches rather than input substitution of synthetic chemicals with agents of natural origin, however, the latter is considered as an integrated tool for the development and design of systemic approaches. The discussions were, furthermore, limited to management of invertebrate pests as well as diseases, while other pests such as weeds have not been included in the discussions. The discussions took place at two workshops and were based on presentations of research from the two countries and field visits in China and Denmark. After the first workshop that took place in China, it was agreed that Chinese and Danish researchers in this particular field had mutual interests and priorities and that there was a potential for creating collaboration that could yield results beneficial for the agricultural/horticultural sectors in both countries. It was also agreed that in spite of the many differences between variation in climate and ecosystems, as well as in farming systems and their organization in China and Denmark, there were many similarities in the production of high-value crops in the two countries, such as vegetables, fruit and berries and, therefore, an obvious focus for joint research efforts. It was also agreed that joint research efforts could aim at specific crops as well as aiming at the development of specific research approaches. Based on the observations and the agreements of the first workshop, the second workshop, which took place in Denmark, focused more specifically on the development of a research framework with specified research questions/topics. Two groups were formed – one working with vegetables and one with fruit and berries working in parallel – both looking into what kind of research is needed for development of systemic approaches to pesticide-free pest management should include both well-known practices and new practices. Although the discussions in the two groups took separate routes and unfolded and described the research topics in each their way, there was a clear consistency between the outputs of the work of the two groups. Each had identified three main research themes that more or less followed the same line and has been merged into three specific recommendations on themes for collaboration, namely: 1) ‘Research to provide the biological foundation and understanding of mechanisms and interactions for development of non-chemical solutions and to improve efficiency of new and existing control methods for severe pest problems’. 2) Research in ‘How best to integrate multifunctional plants (and crops) and use diversification to create a more healthy and productive farming system which is resilient to pests?’ 3) Research in ‘How to design and integrate pest management in eco-functional cropping systems at field and farm/landscape level?

A CRISPR/Cas-Mediated Selection-free Knockin Strategy in Human Embryonic Stem Cells

The development of new gene-editing tools, in particular the CRISPR/Cas system, has greatly facilitated site-specific mutagenesis in human embryonic stem cells (hESCs), including the introduction or correction of patient-specific mutations for disease modeling. However, integration of a reporter gene into an endogenous locus in hESCs still requires a lengthy and laborious two-step strategy that involves first drug selection to identify correctly targeted clones and then excision of the drug-resistance cassette. Through the use of iCRISPR, an efficient gene-editing platform we recently developed, this study demonstrates a knockin strategy without drug selection for both active and silent genes in hESCs. Lineage-specific hESC reporter lines are useful for real-time monitoring of cell-fate decisions and lineage tracing, as well as enrichment of specific cell populations during hESC differentiation. Thus, this selection-free knockin strategy is expected to greatly facilitate the use of hESCs for developmental studies, disease modeling, and cell-replacement therapy

Genome-Wide Identification and Functional Characterization of GATA Transcription Factor Gene Family in <i>Alternaria alternata</i>

In the present study, we identified six GATA transcription factors (AaAreA, AaAreB, AaLreA, AaLreB, AaNsdD, and AaSreA) and characterized their functions in response to environmental stress and virulence in the tangerine pathotype of Alternaria alternata. The targeted gene knockout of each of the GATA-coding genes decreased the growth to varying degrees. The mutation of AaAreA, AaAreB, AaLreB, or AaNsdD decreased the conidiation. All the GATA transcription factors were found to be required for tolerance to cumyl hydroperoxide and tert-butyl-hydroperoxide (oxidants) and Congo red (a cell-wall-destructing agent). Pathogenicity assays assessed on detached citrus leaves revealed that mutations of AaAreA, AaLreA, AaLreB, or AaNsdD significantly decreased the fungal virulence. A comparative transcriptome analysis between the ∆AreA mutant and the wild-type strain revealed that the inactivation of AaAreA led to alterations in the expression of genes involved in a number of biological processes, including oxidoreductase activity, amino acid metabolism, and secondary metabolite biogenesis. Taken together, our findings revealed that GATA-coding genes play diverse roles in response to environmental stress and are important regulators involved in fungal development, conidiation, ROS detoxification, as well as pathogenesis. This study, for the first time, systemically underlines the critical role of GATA transcription factors in response to environmental stress and virulence in A. alternata

Study on Association of Single Nucleotide Polymorphism of MC3R and MC4R Genes with Carcass and Meat Quality Traits in Chicken

Body composition, fat deposition and meat quality are important traits in chickens. Melanocortin receptor (MCR) plays an important role in central melanocortin system (CMS) and muscle cells. The purpose of the present study was to analyze association of the MC3R and the MC4R genes with chicken carcass and meat quality traits. Using eight meat-type chicken populations constructed with 5 pure lines (developed from Chinese local breeds) and 3 crossbreeds (S01&times;D99, S01&times;S05, S01&times;S10), the association of 3 single nucleotide polymorphisms (SNP: MC3R-A1424G, MC4R-G923T and MC4R-C944T) of MC3R and MC4R gene with carcass and meat quality traits was studied. The results showed as follows: (1) the MC3R-A1424G genotypes were significantly associated with most carcass traits except for semi-eviscerated percentage and leg muscle percentage (LMP), the MC4R-G923T genotypes were significantly associated with live weight, carcass weight, leg muscle weight (LMW) and LMP, and the MC4R-C944T genotypes were not significantly associated with most carcass traits except for LMW and LMP; (2) to meat quality, the MC3R-A1424G genotypes significantly affected muscle crude protein (GP) value, and the allele A had positive additive effects on slaughter traits. The MC4R-G923T and the MC4R-C944T sites significantly affected muscle GP value and glutamic acid (Glu) value; (3) the haplotypes based on the 2 SNP of MC4R gene were also significantly associated with meat quality traits, but had no significant associations with carcass traits. The research built the base for further analysis on relation between genetic variation of MC3R and MC4R genes and the carcass and meat quality traits, and molecular marker&apos;s application in breeding

Molecular Cytogenetics Identification of a Wheat-Leymus mollis Double Disomic Addition Line with Stripe Rust Resistance

Leymus mollis (Trin.) Pilger (2n = 4x = 28, NsNsXmXm) possesses a number of valuable genes against biotic and abiotic stress, which could be transferred into common wheat background for wheat improvement. In the present study, we determined the karyotypic constitution of a wheat-L. mollis double disomic addition line M11003-4-4-1-1 selected from the F5 progeny of a stable wheat-L. mollis derivative M39 (2n = 56) Ă Triticum aestivum cv. 7182, by morphological and cytogenetic identification, GISH (genomic in situ hybridization), FISH (fluorescent in situ hybridization), molecular markers analysis and stripe rust resistance evaluation. Cytological studies demonstrated that M11003-4-4-1-1 had a chromosome karyotype of 2n = 46 with 23 bivalents, while GISH and FISH analysis indicated that this line contained 42 common wheat chromosomes and two pairs of L. mollis chromosomes. DNA markers showed that the alien chromosomes from L. mollis belonged to homeologous group 5 and group 6. Evaluation of the agronomic traits revealed that M11003-4-4-1-1 was resistant to stripe rust at the adult stage, while the plant height was reduced and the 1000-grain weight was increased significantly. Therefore, the new line M11003-4-4-1-1 could be exploited as an important bridge material in chromosome engineering and wheat breeding.The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author

Expression analysis, single-nucleotide polymorphisms of the Myoz1 gene and their association with carcase and meat quality traits in chickens

Previous studies reported that the Myoz1 gene plays a crucial role in signal transduction and muscle fibre type differentiation. This finding suggests that the Myoz1 gene is a potential candidate for affecting carcase and meat quality traits in animals. Therefore, this study aimed to detect genetic variations in Avian and Yellow Bantam chickens and to evaluate the effects of these variations on economically important carcase and meat-quality traits. Expression analysis using quantitative real-time PCR indicated that Myoz1 was broadly expressed in all four studied tissues (liver, heart, breast muscle and leg muscle). Expression of Myoz1 was significantly higher in both leg muscle and breast muscle compared to the liver and heart. Then, using direct sequencing, a total of five single nucleotide polymorphisms (SNPs) were identified within the Myoz1 gene in two breeds of chickens. These breeds included three non-synonymous SNPs (SNP1: g. 16022512 G > T, SNP3: g. 16022560 C > T and SNP5: g.16023903 A > G) corresponding to A103S, H119Y and S189G, respectively. Statistical analyses indicated that SNP2 (g. 16022529 T > C), SNP3, SNP4 (g.16023878 A > C) and SNP5 significantly influenced some carcase and meat quality traits. Meanwhile, we did not find any association between the constructed haplotype and carcase traits in the Avian nor Yellow Bantam chickens. In conclusion, SNPs in the Myoz1 gene could be used for marker-assisted selection in chicken breeding